Dong-Chul Kim


Computer Science and Engineering Department
University of Texas at Arlington
Office: ERB 502
Phone: 817-272-0058
E-mail: dkim@uta.edu


Educations

Ph.D., Computer Science, University of Texas at Arlington, 2014
Church Leadership, Christ For the Nations Institute, 2008.
M.S., Computer Science, University of Texas at Arlington, 2007.
B.S., Computer Science, Kyungsung University, 2003.
B.B.A., Commerce and Trade, Hankuk University of Foreign Studies, 2001.

Publications (First author only)

Journals

[J1] D. Kim, C. Liu, and J. Gao, "Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to psychiatric disorders," Bioinformatics, under review.
[J2] D. Kim, X. Wang, C. Yang, and J. Gao, "Effects of low dose ionizing radiation in DNA damage-caused pathways inferred by using reverse phase protein array and Bayesian networks," Bioinformatics, under review.
[J3] D. Kim, X. Wang, C. Yang, and J. Gao, "Reverse Phase Protein Microarray in signaling pathways: a data integration perspective," Drug Design, Development and Therapy (impact factor: 3.49), 2013, under review.
[J4] D. Kim, C. Liu, J. Wang, and J. Gao, "Inference of Gene Regulatory Networks by Integrating Gene Expressions and Genetic Perturbations," BioMed Research International (impact factor: 2.88), Volume 2014, Article ID 629697.
[J5] D. Kim, X. Wang, C. Yang, and J. Gao, "A framework for personalized medicine: prediction of drug sensitivity in cancer by proteomic profiling," Proteome Science (impact factor: 2.49), 10(Suppl 1):S13, 2012.
[J6] D. Kim, X. Wang, C. Yang, and J. Gao, "Learning Biological Network Using Mutual Information and Conditional Independence," BMC Bioinformatics (impact factor: 3.028), 11(Suppl 3):S9, 2010.

Conferences

[C1] D. Kim and J. Gao, "Learning Structure of Bayesian Network Classifier and Application to Personalized Medicine and Biomarker Identification for Lung Cancer," submitted in ICDM2014
[C2] D. Kim, C. Liu, and J. Gao, "Inference of Gene Regulatory Networks by Integrating Gene Expressions and Genetic Perturbations," IEEE International Conference on Bioinformatics and Biomedicine 2013 (IEEE BIBM) (regular paper acceptance rate 19.6%), Shanghai, China, Dec 18-21, 2013.
[C3] D. Kim, X. Wang, C. Yang, and J. Gao, "A Framework for Personalized Medicine with Reverse Phase Protein Array and Drug Sensitivity," IEEE International Conference on Bioinformatics & Biomedicine (IEEE BIBM), Atlanta, GA, Nov 12-15, 2011.
[C4] D. Kim, C. Yang, X. Wang, B. Zhang, X. Wu, and J. Gao, "Discovery of Lung Cancer Pathways using Reverse Phase Protein Microarray and Prior-Knowledge based Bayesian Networks," Proceedings of IEEE Engineering in Medicine and Biology Society, Boston, MA, Aug 30-Sept 3, 2011.
[C5] D. Kim, C. Yang, and J. Gao, "Learning Proteomic Network Structure by a New Hill Climbing Algorithm," Proceedings of IEEE Symposium of Bioinformatics and Bioengineering (IEEE BIBE), pp. 191-196, Philadelphia, PA, May 31-Jun 3, 2010.

Teaching

2014 Summer,
CSE1311 C Programming, Grade.
2014 Spring, CSE1301 Computer Literacy, Grade.
2013 Fall, CSE1301 Computer Literacy, Grade(section1), Grade(section2).
2013 Summer, CSE1311 C Programming, Grade.
2013 Spring, CSE1301 Computer Literacy, Grade(section1), Grade(section2).
2012 Fall, CSE1301 Computer Literacy, Grade(section1), Grade(section2).
2012 Summber, CSE1311 C Programming.
2012 Spring, CSE1301 Computer Literacy, Grade.

Experiences

2011 Fall, Research Assitant
2011 Summer, Visiting Scholar, China
2011 Spring, Research Assistant
2010 Fall, Teaching Assistant, CSE5370 Bioinformatics
2010 Summer, Teaching Assistant, CSE1320 C programming
2010 Spring, Teaching Assistant, CSE1320 C programming
2009 Fall, Teaching Assistant, CSE1320 C programming
2009 Summer, Teaching Assistant, CSE3302 Operating Systems, CSE3320 Programming Languages
2009 Spring, Teaching Assistant, CSE1105 Introduction to CSE
2008 Fall, Teaching Assistant, CSE3320 Programming Languages
2007 Spring, Teaching Assistant, CSE1301 Computer Literacy
2006 Fall, Teaching Assistant, CSE1301 Computer Literacy